利用Illumina HD SNP技术对484头中国西门塔尔牛SCD1基因的遗传变异及其与部分肉质性状的相关性进行了分析。结果表明,该群体中存在7个SCD1基因的SNP位点。SCD1基因第4内含子存在A8605G、A9229G与A10050C 3个SNP位点;第5内含子存在1个SNP位点A12304G;3’UTR区存在A13655G、C14790T与A15565G 3个位点。A8605G位点的B等位基因为优势等位基因,频率为0.748,其他位点等位基因频率在0.4～0.6之间。χ2检验结果显示,SCD1基因的所有SNPs均处于哈代-温伯格平衡状态(P>0.05)。SCD1基因的7个SNPs位点全部为中度多态,杂合度和有效等位基因数均较高。SCD1基因SNP多态性与肉质性状的关联分析表明,SCD1基因对肌内脂肪含量、剪切力、大理石花纹等级和脂肪颜色有一定的影响,可以作为改善牛肉质量进行标记辅助选择的重要候选基因。
Objective The aim was to provide basis for molecular marker assisted selection and resistance breeding of Langya chicken. Method The genetic polymorphism of Hae III site of Mx gene 3＇ sequence in Langya chicken was analyzed by PCR-RFLP. Result The results showed that Hae III site controlled by allele A and B were polymorphic in Langya chicken breeds and the allele frequencies of A and B were 0.562 and 0.438 respectively. The genotype distribution of Hae III site was significantly not in Hardy-Weinberg equilibrium （ P 〈0.01 ）. The polymorphic fragments were cloned and sequenced, and the results revealed that the fragment size was 357 bp and a deletion of 31 bp occurred in variation sequences. Conclusion It was found that Hae III-RFLP exists in Mx gene 3＇ sequence in Langya chicken breeds of Shandong Province.
