In order to classify the minimal hepatic encephalopathy (MHE) patients from healthy controls, the independent component analysis (ICA) is used to generate the default mode network (DMN) from resting-state functional magnetic resonance imaging (fMRI). Then a Bayesian voxel- wised method, graphical-model-based multivariate analysis (GAMMA), is used to explore the associations between abnormal functional integration within DMN and clinical variable. Without any prior knowledge, five machine learning methods, namely, support vector machines (SVMs), classification and regression trees ( CART ), logistic regression, the Bayesian network, and C4.5, are applied to the classification. The functional integration patterns were alternative within DMN, which have the power to predict MHE with an accuracy of 98%. The GAMMA method generating functional integration patterns within DMN can become a simple, objective, and common imaging biomarker for detecting MIIE and can serve as a supplement to the existing diagnostic methods.