The average annual value of COD (chemical oxygen demand) fluxes of the Changjiang River (Yangtze River) and its main tributaries in the past decade (i.e., 1991–2000), has been evaluated. Based on the data from the Datong Hydrological Station (DHS), it was found that the Dongting Lake drainage basin contributed the greatest water discharge (35.8%) and COD flux (48.3%) among the main tributary drainage basins, followed by the Poyang Lake drainage basin with the contributions of 15.4% and 19.3%,respectively. By the end of the year of 2000, COD flux in the Changjiang River rose by almost 45% relative to that in the year of 1991, reaching about 1941000 ton/a at DHS. Statistical analysis revealed that industrial wastewater discharge, as well as COD in it, was found decreasing in the same period, due to the gradual reinforcement of environmental management. Moreover, correlation analysis indicated that non-point pollution from agriculture and increasing discharge of domestic sewages caused by rapid growth of population along the Changjiang River drainage valley should be responsible for the high COD. Furthermore, with the current trend of population growth and agricultural development in this basin, water quality of the Changjiang River, in terms of COD level, is going to deteriorate in the near future. Thus, the rational applications of fertilizers and pesticides in agriculture and the proper treatment of domestic sewages before they are discharged would be the most concerned controlling parameters.