为建立黄酮类化合物的PIM-1激酶抑制活性与其物化性质间的QSAR模型,本研究采用密度泛函理论(DFT)中的B3LYP方法,在6-311G^(**)基组上全优化计算17个作为PIM-1激酶抑制剂的黄酮类化合物结构参数,运用SPSS 12.0 for Windows程序,将这些量子化参数作为理论描述符,逐步回归得到预测黄酮类化合物PIM-1激酶活性的相关模型。该模型相关系数R^2为0.934,交叉验证相关系数q^2为0.890,说明所建模型具有良好的预测能力和较强的稳定性;所建模型包含2个参数(分子平均极化率(α),最负原子电荷(q^-)),其中分子极化率对该类化合物PIM-1激酶活性有最显著影响。
Toxicities (-lgEC50) of 16 fluorobenzene derivants against vibrio qinghaiensis (Q67) were measured systematically,and their quantum chemistry parameters were calculated at the B3LYP/6-311G** level. Based on the experimental toxicity data and quantum chemistry parameters,2D-QSAR model was proposed,which was validated by variance inflation factors (VIF),t-value and cross-validation method. At the mean time,comparative molecular force field (CoMFA) based on molecular simulation was used to investigate the toxicity of fluorobenzene derivants. Furthermore,the intoxicating mechanism of fluorobenzene derivants was discussed. To our interest,2D-QSAR and CoMFA models exhibit good prediction ability,with which the toxicity of similar compounds can be predicted. Finally,toxicities (-lgEC50) of 12 fluorobenzene derivants against vibrio qinghaiensis (Q67) were predicted with these models.
The structural and thermodynamic properties of 75 polychlorinated thianthrenes(PCTAs) in the ideal gas state at 298.15 K and 1.013 ×105 Pa have been calculated at the B3LYP/6-31G level using Gaussian 98 program.Based on the output data of Gaussian=the isodesmic reactions were designed to calculate standard enthalpy of formation(△fHθ) and standard free energy of formation(△fGθ) of PCTAs congeners.The relations of these thermodynamic parameters with the number and position of Cl atom substitution(NPCS) were discussed=and it was found that there exists high correlation between thermodynamic parameters(total energy(TE)=zero-point vibrational energy(ZPE)=thermal correction to energy(Eth)=heat capacity at constant volume(Cvθ)=entropy(Sθ)=enthalpy(Hθ)=free energy(Gθ)=standard enthalpies of formation(△fHθ) and standard Gibbs energies of formation(△fGθ)) and NPCS.On the basis of the relative magnitude of their △fGθ=the order of relative stability of PCTA congeners was theoretically proposed.In addition=the correlations between structural parameters and NPCS were also discussed.The good correlations were found between molecular average polarizability(α)=energy of the highest occupied molecular orbital(EHOMO)=molecular volume(Vm) and NPCS=and all R2 values are larger than 0.95.Moreover=it was supposed that the isomer groups with higher toxicity should be Tri-CTA and TCTA .
Optimized calculations of 75 PCDDs and their parent DD were carried out at the B3LYP/6-31G* level by density functional theory (DFT) method. The structural parameters were obtained and significant correlation between the Cl substitution position and some structural parameters was found. Consequently, the number of Cl substitution positions was taken as theoretical descriptors to establish two novel QSPR models for predicting lgKow and –lgSw of all PCDD congeners. The two models achieved in this work contain two variables (Nα and Nβ), of which r = 0.9312, 0.9965 and SD = 0.27, 0.12 respectively, and t values are all large. The variation inflation factors (VIF) of variables in the two models herein are both less than 5.0, suggesting high accuracy of the lgKow and –lgSw predicting models, and the results of cross-validation test also show that the two models exhibit optimum stability and good predictive power. By comparison, the correlation and predictive ability of the present work are more advantageous than those obtained using semi-empirical AM1 and GC-RI methods.
